I took a distribution from my IRA for 100K to cover downpayment to bridge 2 homes. I repaid 90K within 30 days. The 1099-R still shows 100K, how do I do this on my form?

I should only be paying 10% penalty on 10K and taxes on 10K but the 1099-R is showing the full amount of 100K.  I am uncertain where to mark it to show that repayment.