Retirement tax questions

I have a Precious Medals Traditional IRA with Noble Gold.  They work through Equity Trust Company.  I'm 66 years old and last February of 2023 I withdrew $50,407.17 from the account and 10% was given to the Federal Government.  $45,366.45 was deposited into my Credit Union.  I received my 1099-R and while attempting to do my taxes for 2023 it appears that I still owe them $7000 more in taxes!  How is this possible?