It should just be a matter of entering the Form 1099-R that will be generated when you take the distribution from the SEP-IRA and convert the funds to a Roth IRA.
After you enter Form 1099-R, there will be follow-up questions asking what you did with the money. As part of those questions, you will indicate that it was converted to a Roth IRA. You should also be asked about the basis (non-deductible contributions) of the SEP-IRA since that will determine the amount that will be included as taxable income for the conversion. Since your basis will be zero, the entire conversion will be taxable.
If you run into any difficulty or have further questions, you can always post them here for some help.
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