Retirement tax questions

So I re-entered all my information from scratch to try to figure out what is going on. 

I think TT is adding the 6000$ withdrawal to my taxable income. ( I don't think it is applying 10% tax on that amount )

is that what the excess removal is considered ? ( this was a non-deductible contribution to my Roth IRA ) 

it seems like I am paying taxes twice on the same amount.