After you input your W2 continue to the screen "lets check for uncommon situations" where you will check "Religious employment" continue and check "clergy" continue to input/confirm your housing allowance, continue to "Now tell us about your clergy self-employment taxes" screen. Here is where you tell TurboTax how to tax your wages and housing allowance. Employers will tax the wages and retirement portion only, or not at all. If your W2 shows SS tax is approximately 6.2% of the SS wages (wages plus retirement), then choose option "Pay self-employment tax on my housing allowance." If there are no SS wages or tax, then choose "Pay self-employment tax on my wages and housing allowance". Hope this helps.
