Retirement tax questions

You should get two different 1099-R forms, because the funds should have been in different accounts even if they were in the same overall plan.  

All withdrawals from the 401k are subject to income tax plus a 10% penalty for early withdrawal.  

Withdrawals of contributions from the Roth account are non-taxable.  Withdrawal of earnings will be subject to income tax plus a 10% penalty in your situation.