"That's interesting that the forms are different for Spouse." They shouldn't be. The developers simply goofed.
Since you were not permitted to take an in-service distribution to do a rollover in the normal fashion, it might be appropriate to report each as cashed-out (not rolled over), then report each as a CRD and a repayment. That should cause your tax return to include Forms 8915-E for both you and your spouse showing zero taxable. That would alleviate your concerns that the distributions were only permitted as CRDs.
Note, however, that each of you is permitted a maximum of $100,000 of CRDs.
I'm puzzled why you each received three Forms 1099-R instead of just two. I would have expected just one from the traditional account and just one from the Roth account for each of you.
