Retirement tax questions

My  actual1099-R has the IRA/SEP/SIMPLE box checked.  If I include that in Turbotax it does not give me an option to indicate that I rolled over this distribution back into the account.  If I uncheck that box, it will allow me to answer that question.  However, that will create a mismatch between my filing and the 1099-R.  Even if I delete the entries and create a new 1099-R in TTax, if I check that IRA/SEP/SIMPLE box, I do not get the option to indicate a rollover.  How do I deal with this?   Thank you.