It depends on what "made federal and state tax payments" means.
If you had Vanguard withhold taxes at the time of the distribution, that withholding will be shown in box 4 (federal) and box 12 (state) of your 1099-R. When you enter the 1099-R, TurboTax will put the withholding on line 17 of form 1040 (2019 version) added to any other withholding you have (e.g. W-2).
If you sent in estimated taxes, separately, then yes enter as estimates
