They are two completely separate transactions, so ignore the second when entering the first.
For the first 1099-R, check that it was rolled over to another IRA or qualified plan. (You only get the option of a Roth if you select "I did a combination of things" for the question before, so that's probably where the mistake is.)
For the second 1099-R, you would report that you kept the money and it is qualified as a coronavirus-related distribution. But that section of the program isn't installed yet because the IRS hasn't approved the forms or instructions. We are guessing mid-february but have heard nothing official on when it will be ready. I would delete the second 1099-R and enter it when the program is updated.
