The IRS no longer allows for the reporting of proceeds on a 1099-B to be negative. If your broker has reported your proceeds as a negative, you can contact them and ask them issue you a corrected 1099-B. If you downloaded your 1099-B, you can input manually. If you have a lot of transactions, you can report sales section totals. After entering your sales section totals you can upload a copy of your Form 1099-B with the trade details, so you won't need to worry about your input matching the IRS records.
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