If you did not enter any personal use days, TurboTax will not consider it a 2nd home and won't transfer over the excess interest.
Right under the days rented at fair market value, be sure to enter the days that you used it as your 2nd home. (The days entered for personal use should be the remaining number of the days not rented.)
If you are still having this issue, please try deleting that mortgage interest and going back through the rental questions all over again.
@anne
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