In using the Quick Employer Forms feature, you e-file the necessary "information return" Form 1096 which merely reports your 1099-MISC issuance to the IRS. It is not related to, and has no impact on, your regular income tax return. It does not represent 'double counting' the expenditure being reported.
Issuing and reporting a 1099-MISC is an activity separate from preparing and e-filing your tax return. It doesn't "import" anything to your tax return. You already have accounted for your expenditure when you prepare your tax return and e-file it separately. Your income tax return does not per se directly "submit" any 1099-MISC to the IRS. That is why a separate "information return" is used to report the issuance of a 1099-MISC.
