Vanguard incorrectly reports wash sale losses

When receiving Vanguard EOY forms, they do not correctly report losses on closed out positions on stocks. I have talked to them about this and they say talk to your accountant. I have wash sales, that were completely closed out for over 30 days before the end of the year, and NEVER replaced. But the vanguard reports have no way to report this. They simply disallow the wash sale in calculations. How do I rectify when filing tax return without causing an audit? I know the amount of disallowed loss, but how do I enter it! Please help. Substantial loss. Calculations complicate, but since never replaced stock, why can't I ignore the wash sale amount?