Check your input under the section Business Income, Less Common Business Situations, Sale of Business Property.
Only the box on the bottom for additional like-kind exchanges should be checked. If the box on top, sales of business property is checked, you may also have entered it as a sale.
If you continue further, it should take you to a screen that shows Sale of Business Property (Copy 1). If information was entered there, you probably have to delete it (Copy 1) because that's producing Form 4797 and Schedule D.
As you continue further in this section, you should see the like-kind gain previously entered, which should be the only input in this section.
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