Was there just one 1099 MiSC reporting one royalty payment or were there several 1099's issued? if it was one Royalty Payment, then you are entering Taxes paid for that Royalty payment as an expense against the income of that payment. it is not an tax expense to the company, but it is a tax expense to you for you to claim to reduce your taxable income from the royalty. it doesn't matter if you paid one jurisdiction or 4 jurisdictions.
If you have more than one 1099 MISC, then each royalty payment will need to be reported separately, along with the taxes paid from each royalty payment. If you just have one 1099 MISC, report the total taxes paid against the Royalty payment and don't try to split hairs in allocating tax payments between the jurisdictions.
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