The sale of securities, (securities held in an "after tax" account, like a brokerage account), is reported using the "Stocks, Mutual Funds, Bonds, Other" interview. However if you want to use TurboTax "online" you need to move up to the Premier versions as that's the first version in the cost ladder that handles security sales.
As BobB7 says, what you did with the proceeds of your stock sales has nothing to do with your need to report the sales and has nothing to do with any calculation of gain or loss.
Tom Young
