You will not need to amend your Federal return if the carryover is correct on your Federal return. The amendment will not prompt an audit. Typcially you will see an audit triggered if there is missing or excluded income on the return or if information does not appear to be correct. I personally haven't seen many issues like this in TurboTax so I am not certain as to why the carryover worked for the Federal return but not for Wisconsin.
@TomG1
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