I'm not following you. How did you enter the $5400 to start with? Did the school include it in box 1? If so, just change box 1 to what it should be, if you know it to be wrong. The 1098-T you enter is not sent to the IRS. It is essentially a worksheet.
I have not heard of any problems with the link not being there. I just check my software. It's there. But, changing box 1 does they same thing.
