Carl
Level 15

Education

Generally, you *have* to work through the education section from start to finish, the way it's designed and intended to be used. Otherwise, in my personal experience with it back when my kids were in college, the program does not do the math correctly. Now I myself never had to deal with more than one 1099-Q a year. So it is possible there could be a program issue. Could you please work through the education section as advised above? Then report back here with your results.
Note that you are not done with the education section until you have reached a screen with a DONE button on it, and clicked it, and are returned to the list of items under the Deductions & Credits tab.
The below is provided just as an FYI, as you probably already know it.

1099-Q Funds
 First, scholarships & grants are applied to qualified education expenses. The only qualified expenses for scholarships and grants are tuition, books, and lab fees. that's it. If there is any excess, then it's taxable income. It automatically gets transferred to line 21 of the 1040 with an annotation of "SCH" next to it.
Next, 529/Coverdell funds reported on 1099-Q are applied to qualified education expenses. The qualified expenses for 1099-Q funds are tuition, books, lab fees, AND room & board. That's it. If there are any excess 1099-Q funds they are taxable. The amount is transferred to line 21 of the 1040 with an annotation of "SCH" next to it.
Finally, out of pocket money is applied to qualified education expenses. The only qualified expenses for out of pocket money is tuition, books, and lab fees. Room & board is NOT a qualified expense for out of pocket money.
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When you have a 1099-Q it is extremely important that you work through the education section of the program in the order it is designed and intended to be used. If you do not, then there is a high probability that you will not be asked for room & board expenses, and you could therefore be TAXED on your 1099-Q funds.
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Finally, if "all" qualified expenses are covered by scholarships, grants, 1099-Q funds and there is ANY of those funds left over that are taxable. While the parent can still claim the student as a dependent, it is the student who will report all the education stuff on the student's tax return. That's because the STUDENT pays the taxes on any excess scholarships, grants and 1099-Q funds.