It seems like you cannot find the startup costs under "miscellaneous expense." If it is not such a huge difference, I would reconcile the difference by either adding or deleting an expense from elsewhere to even the total expenses out.
At the end of the day, an expense is an expense, so I would not go crazy over it. Then again if you overvalued the "startup costs" by thousands of dollars, then maybe deleting the self-employment section and entering again is the best option.
