Separating the income as of the DOD is the correct way to do it. I have had estate attorneys tell me no on bothers. Especially if it is just a couple of weeks or months. But you have done it correctly.
You won't have anything to worry about if the 1099s have the correct SSN or EIN and that income is reported on the appropriate 1040 or 1041. The IRS is very good at catching missing income from 1099s but not so good at catching many other things. (Of course you still must do it right, but my point is not to worry if you do it right and the 1099s match).
Good look and sorry for your loss.
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