The S-Corp can reimburse you for your actual mileage expenses, as long as you submit an expense report to them. A home office would be completely different. They cannot reimburse you for the use of you home. If they pay you for the use of part of your home as an office, that would be rent and you would have to report the rental income. They can reimburse you for internet, telephone, office supplies, etc. but they can't pay you for the use of your house and call it reimbursement.
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