It depends on what you are being reimbursed for? Generally you would log the expense under the expense account i.e. if it is business travel you would have a sub account called business miles expense reimbursement and you would log that amount there. If you are being reimbursed for client meals you would enter it under meals...
Ultimately the bill you submit to your company for reimbursement should be broken out into the expense categories or buckets. Meals, travel (more specifically hotels, air, rental car, miles), utilities...
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