That's great that you employer allocated both States Taxes on your W-2. File a Resident Return to the state you lived in, reporting your total income.
File a Non-Resident Return for the State you didn't live in and report only Wages Earned and Taxes Withheld for that state.
Unless you moved from one state to the other, in which case you would file a Part Year Resident Return for both states.
Click the link for more info on filing multiple states.
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