How should a husband-wife LLC file?

My wife and I are the only members of an LLC.  Our CPA had us filing a Schedule C as a Sole Proprietor.  It's my understanding that is acceptable as a disregarded entity.  Is that correct? 

But TurboTax wants two Schedule Cs for a husband-wife partnership.  Note my wife owns 51% of the LLC.  Our CPA did one Schedule C with both our names as the proprietor.  But then he generated separate Schedule SEs per our percentage ownership.  I hope to start doing my own taxes using TT, but it may be too complicated.