Yes. Since the single member LLC is being reported on your personal return on Schedule C it will be associated with your name and SSN. In the interview for the Schedule C you can enter your business name and EIN for the LLC. When you enter the 1099-Misc you will associate them with your LLC by either entering them in during the business questions or by entering them in the personal questions and linking them to your Schedule C. I would suggest just entering them under the business section interview.
