Business & farm

If you are a 2% owner or considered as such, you would need wage income from the S corporation in order to deduct your self-employed health insurance premiums properly. The corporation would deduct the insurance on the corporate tax return, then it would be added to your wages in box one on your W-2 form. Then you would deduct it on your personal tax return as self-employed health insurance. So, the deduction would appear on the corporate return and you'd get your share of it by virtue of a smaller income reported on your K-1 schedule.

The short answer to your question however, is that you will be asked when you enter your K-1 schedule in TurboTax if you paid health insurance for yourself and the corporation paid you wages on the screen that says Other Situations:

If you check that box, on the next screen you can enter your premiums to get the deduction. Also, if you have insurance through the government healthcare exchange, when you enter your Form 1095-A you will be asked if it is associated with self-employed health insurance, and you will have an opportunity to link the insurance to the corporation at that time.