Just to be clear, you e-file your tax return which is form 1040 and attached forms and schedules. You don't "file a W-2".
Having said that, what happens when you try to file your return? Do you get an error message? Since we can't see your private tax data, it's hard for us to help you without some additional context.
Yes, there is a way to upload your desktop tax data to the Online system, but you don't want to do that. Instead, work with us to tell us what's happening when you try to file your 1040. I don't of any reason why you can't e-file right now from the desktop product.
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