As you go through the Home Office section of your Schedule C, TurboTax will first take you through the expenses and information for the home office in your current residence, if that address is the one entered as your mailing address for your tax return. Then, after that one is finished, you can enter the details for the second home office (the one used earlier in the year).
Go back through your Home Office section and be sure that the dates and office addresses match up properly.
When it comes to allocating your business expenses to each home office, the following TurboTax help article may give you some additional guidance:
How do I allocate expenses for two home offices?
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