On the 8889, Part I is for Contributions and calculating the contribution limit for a particular HSA, Part II is for reporting distributions from that same HSA, and Part III is for taxpayers who used the last-month rule in the previous year but failed to stay under HDHP coverage (this does not apply to most taxpayers).
I say "a particular HSA" because an HSA belongs to an individual; hence you each own your own HSA (if you both have one - it sounds like you do from the way you said "Both my husband and I had HSA accounts"). Note that each of you have your own 8889, which TurboTax calls 8889-T (taxpayer) and 8889-S (spouse).
Distributions are therefore from one HSA or the other. You said that TurboTax did not fill in Parts II and III for your husband; this would be correct if he did not take any distributions from his HSA (whether or not you did from your HSA is quite separate). Of course, please understand that it is OK for you two to spend money for qualified medical expenses on both of you from one HSA; this is just a question of which HSA the distribution came out of.
So if your husband did have a 1099-SA because he took spent money out of his HSA but Part II is blank, then please go back to the HSA interview and see who is the owner of the HSA that had the distribution. You can do this by editing the 1099-SA (instead of "Done") and seeing which of you is checked off just above the name of the Payer.
