The calculations for Form 8962 don't look separately at individual shared months. It only considers your total household income, and the % of allocation you received and applies it to all months on the 1095-A. If choosing a 1% allocation works out as you intended in your situation, you can use that amount. Advise the other taxpayer to elect 99% for their allocation on their return.
Here's the IRS Instructions for For 8962.
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