If you are talking about your pay stub for your current payroll, ask your employer.
If you are talking about your W-2, then all the items you mention should already be removed from your box 1 wages. In addition, the HSA (but not the 403b or 457) is also removed from your box 3 and box 5 wages. If you think your W-2 is wrong, you need to contact your employer.
Then in turbotax, even if your HSA contributions were removed from your box 1 wages, they will be added back to your taxable wages on form 1040 unless you complete the HSA interview to certify you were enrolled in a qualified HDHP. Make sure you complete the entire HSA interview, you can access it on the Deductions and Credits page under health care.
