These two 1099-SAs, the distribution code was 1 for each. Was the distribution amount equal to any medical expenses you had, or was the 1099-SA for the first HSA obviously reporting the amount transferred over to the second HSA?
As I said above (I think), the first HSA custodian should not have issued a 1099-SA for the transfer to the second. If this is the case, you should two things: (1) ignore the 1099-SA (don't enter it into TurboTax, and (2) document what you did and why and put it in your tax archive in case anyone ever asks.
One thing that triggers the IRS is when you don't report a form that they have a copy of. But in this case, the HSA custodian should never have issued a form, so if you get a letter about this, just tell them this story.
I am assuming that the 1099-SA for the second HSA is for qualified medical expenses, in which case, you just enter it into TurboTax as normal.
Note that you don't have to include your 5498-SA in your tax return, so just stick them in your tax archive.
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