It depends. If you are referring to the check boxes for the lines below, you should go ahead and file your tax return as is. There is no need for concern at all.
- (D) Long-term transactions reported on Form(s) 1099-B showing basis was reported to the IRS (see Note above)
- (E) Long-term transactions reported on Form(s) 1099-B showing basis wasn’t reported to the IRS
Either way the capital gain or loss is correct on your tax return and the check box doesn't change that.
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