Yes, in Schedule A under Medical Expenses, enter a placeholder for the medical expenses that were covered by the HSA.
TurboTax assumes that you enter on Schedule A all medical expenses no matter how they were paid, so the HSA reimbursements (the 1099-SA) are subtracted from the expenses entered in Schedule A.
Your solution is to add a Miscellaneous medical expense of $5k (in your example) with a description of "HSA covered expenses". This will increase your medical expenses to where they should be, rather than having to add each individual one.
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