Deductions & credits

Doesn't one have to enter the medical expenses to offset the 1099-SA?  I had a 1099-SA for medical expenses I was reimbursed for and did not enter those medical expenses in TurboTax.  I also had other medical expenses that were NOT reimbursed via an HSA and I entered these expenses in TurboTax.  TurboTax then deducted my HSA reimbursement funds from the latter.  My understanding is we should not enter the medical expenses on our taxes if we were reimbursed with an HSA. Isn't TurboTax forcing us to enter the HSA reimbursed funds as well to counter this subtraction?