@Beachfan11
I am thinking that when TurboTax asks you if you will withdraw the excess by the due date of April 15, 20XX, you should just say Yes.
Although the TurboTax interview does not talk about extensions, the instructions for the 8889 clearly state that you can withdraw the excess by the extension date (as you know).
In looking at the 8889, I don't see that withdrawing the excess between April 15th and October 15th would make the form look any different. And the form just says "due date of your return" on line 14b, it does not specify April 15th (which is good since the due date isn't always April 15th).
Give it a try and see what it looks like.
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