Don't worry about it seeming to be wrong to report and employer contribution as your own.
In fact, you are required to report all HSA contributions, no matter where they come from. And in this case, you don't have the mechanism of a W-2 to report it, so the way I told you is the correct way.
HOWEVER, you can't take it as a deduction (on line 13, Schedule 1 (1040)), if you did not report it as income.
What is on the 1099-SA? What was it for? Did you report it as qualified medical deductions? I don't understand how you got it reported as income, the first time.
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