It shouldn't make a difference in what order you enter your 1098's for Mortgage Interest. However, make sure for the HELOC, that you indicate it is a HELOC, and what amount of the proceeds was used on the home.
Sometimes the Refund Meter is strange, so if you are seeing these results immediately after your entries, keep going through your return items, the number may change again, possibly when you finish the Deductions & Credits section, and move to the next section.
Here's more info on Deducting Mortgage Interest.
@jyeh74
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