Deductions & credits

1) yes, just override the 25k.  there is no inconsistency.  If you are ever audited by the IRS, you have the documentation to show how you deducted some interest on Sch A and the rest on Scd E.  

 

2.  No you don't have to. Taxing authories "love it" when you don't take deductions entited to you.  While I am not really familiar with CA taxes, you may be better off following the CA rules.  Here's why: on the federal return, you are likely a passive investor, so your losses are only deductible up to a point (the rest are deferred to a future year).  If CA works similarly, then you would want to take the deduction as a personal deduction and not a real estate deduction so that you can take the deduction now versus years into the future.  Something to look into.