Don't enter any additional contributions in the HSA section. TurboTax automatically carries over the code W amount from your W-2 to Form 8889. You have to go through the follow-up questions in the HSA section and indicate you had HDHP coverage to keep the amounts tax-free.
Search for HSA and use the Jump to HSA link to get to the questions. If you entered the Code W amount in this section, delete it and be sure to answer the questions about having an HDHP.
What is a Health Savings Account?
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