I am guessing that the rental properties have their own utilities and other expenses. The only shared items are probably mortgage, tax, and minor stuff like lawn care. Items you can easily divide and enter yourself.
The easiest thing to do, since you understand the rules, is to enter the expenses associated with the rental directly rather than have the program dividing and pulling the data. Once you switch to entering the correct figures, the deductions for sch A will be available for adjustment.
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