No, you don't put money into an HRA, unless your employer is breaking the law.
You might have an HSA. The differences are explained here.
https://www.irs.gov/forms-pubs/about-publication-969
Contributions made to an HSA via payroll deduction are reported on your W-2 and automatically handled by Turbotax. They are already taken out of your paycheck before taxes, so you can't take another tax deduction for them. Contributions that you make directly to the HSA bank out of pocket are tax deductible, assuming you have qualifying medical coverage, usually called a High Deductible Health Plan or HDHP.
If you have not been deducting this in the past, you may need to file amended returns.
If you have been making contributions but don't have a qualifying HDHP, you may owe significant penalties.
