Yes, this is how you will file your return:
When you go into the HSA interview in TurboTax, the box that you have an HSA will already be checked (because you have 2,000 with the code of W in box 12 on your W-2).
Go through the HSA interview for you, and when you are asked if you had HDHP coverage, answer "No" and continue. This will trigger the excess contributions processing.
Then everything will go as Opus said above.
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