Try walking through your entries again… it sounds like the exclusion should apply to you.
In TurboTax Online:
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If you’re on the Hi TurboTax Client, let's keep working on your taxes! screen, click the Pick up where you left off button
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Click Federal in the left pane, if you’re not already there
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Click Income & Expenses in the banner
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Scroll down and click Show more to the right of Less Common Income
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Click Start or Review to the right of Sale of Home (gain or loss)
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Review all relevant information on the subsequent screens
See Is the money I made from a home sale taxable? for exclusion information.
