TurboTax is only taking away the Advance Child Tax Credit you entered. When you start your return and/or add your dependents to your info, TurboTax assumes you will receive the full Child Tax Credit of, in your case, $3,000 per child. Once you enter that you already received the $3,000 you mentioned, it removes that portion from your full credit. Without that, your amount due on the tracker at the top of the screen goes up.
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