As it turns out, you enter this in the K-1(1120) interview.
Do a Search (upper right) for k-1 and click on the jump-to link (Mac users must find K-1 in the Topics List).
Then choose the S corporations, and start the K-1 (1120) interview. 8 or so screens in, you will see a screen that is titled, "Other Situations". Check the box that says, "I personally paid health insurance and/or long term care insurance premiums for myself and my family, and the S corporation paid me wages."
When you hit Continue, the next screen will ask you for the amount of the premiums paid.
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