The employer HSA contribution amount is transferred from W-2 entries. You should double-check your spouse's W-2 and see if there is an entry in Box 12 with Code W and an amount. If so, that is indicating a contribution to a Health Savings Account.
Another thing to check is the ownership of the W-2 to be sure it is tied to the correct person. If your W-2 was entered as your spouse's W-2, that would also transfer the contribution amount to the HSA section.
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