Your husband will need to file a New York return that includes all of his income, but the tax will be prorated to represent the share of it that was earned while he was in New York.
The state uses the entire amount of income to determine the tax rate, but then uses a formula to prorate the tax based on the proportion earned inside the state.
Because of the way the tax is calculated you will see all of the income on the tax return, but the amount of tax will be relatively small if only two weeks of the income was New York source income.
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